Dr. Markus Schmidt
Postdoc
Bioinformatician / Computer Scientist developing algorithms and tools to analyze sequencing data.
Currently working on:
- Tools to analyze chromosome conformation capture data
- Pangenome assembly
Links
Orcid
Github
Google Scholar
LinkedIn
Email: markus.schmidt@lmu.de
Key Publications
Schmidt MR*, Barcons-Simon A, Rabuffo C, Siegel TN* (2024)
Smoother: on-the-fly processing of interactome data using prefix sums.
Nucleic Acids Research 52: e23 doi: 10.1093/nar/gkae008
Schmidt MR, Heese K, & Kutzner A* (2019)
Accurate high throughput alignment via line sweep-based seed processing.
Nature Communications 10: 1939. doi: 10.1038/s41467-019-09977-2
Rabuffo C, Schmidt MR, Yadav P, Tong P, Carloni R, Barcons-Simon A, Cosentino RO, Krebs S, Matthews KR, Allshire RC, Siegel TN* (2024)
Inter-chromosomal transcription hubs shape the 3D genome architecture of African trypanosomes.
Nature Communications 15: 10716 doi: 10.1038/s41467-024-55285-9
Schmidt MR, Kutzner A* (2023)
MSV: a modular structural variant caller that reveals nested and complex rearrangements by unifying breakends inferred directly from reads.
Genome Biology 24: 170. doi: 10.1186/s13059-023-03009-5
Education
PhD and Master
in Information Systems
at Hanyang University, South Korea
Bachelor
in Computer Science
at Friedrich-Alexander University Erlangen-Nürnberg, Germanny